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Table 1 Description of the 6 best SNP for remission (A) and response (B) in both the analyzed samples

From: Genome-wide association study of antidepressant response: involvement of the inorganic cation transmembrane transporter activity pathway

   

Korean sample

STAR*D

SNP

Chromosome base pair

Gene

MAF

Odds ratio

Statistics

p

MAF

Odds ratio

Statistics

p

A

          

rs9315310

13

NBEA (165 Kbp)

0.28

3.67

3.1.32

<0.00001

0.21

1.21

2.112

0.034700

35351431

rs672170

6

RGS17

0.45

3.48

3.130

0.001748

0.36

1.18

2.155

0.031140

153345185

rs2532560

12

PARP11 (179 Kbp)

0.14

0.16

−3.079

0.002075

0.20

1.20

2.002

0.045270

4161871

rs2831440

21

N6ATM1 (800 Kbp)

0.39

3.53

3.045

0.002327

0.32

0.79

−3.126

0.001774

29428098

rs766127

6

RGS17 |MTRF1L |FBXO5

0.42

2.89

2.954

0.003134

0.30

1.21

2.374

0.017580

153313832

rs4737771

8

CRH (100 Kbp)

0.20

0.24

−2.943

0.003246

0.12

1.26

2.005

0.044920

67192379

B

          

rs49411

3

FHIT

0.50

0.36

−3.292

0.0009939

0.49

0.85

−2.277

0.022760

59757575

rs10997242

10

CTNNA3

0.29

0.32

−3.025

0.0024890

0.16

1.30

2.788

0.005303

68336295

rs16873129

7

RAPGEF5

0.17

0.32

−2.912

0.0035970

0.07

1.32

2.103

0.035470

22145084

rs2299267

7

PON2

0.39

0.46

−2.858

0.0042650

0.17

1.26

2.486

0.012930

95061921

rs2112460

19

CACNA1A

0.21

2.84

2.759

0.0057920

0.48

1.19

2.497

0.012530

13590412

rs521093

1

EPS8L3 (62 Kbp)

0.10

5.13

2.728

0.0063760

0.20

1.21

2.096

0.036040

110368230

  1. When a SNP is localized in an intergenic region, the nearest gene is reported with distance in parenthesis
  2. MAF minor allele frequency