Table 2 Details of NR3C1 (GR) SNPs analysed in this study
dbSNP rs # | location (UCSC build Hg19, Feb 2009 | location, description, (common name) | poly-morphism (major/minor allele) | MAF | HWE  p- value |
|---|---|---|---|---|---|
rs10052957 | 142786701 | 5' UTR; 2656 bases upstream of exon 1B (Tth111l) | C/T | 0.320 | 1 |
rs72801094 | 142785905 | 5' UTR; 1860 bases upstream of exon 1B | A/G | 0.046 | 0.177 |
rs5871845 | 142783949 | 5' UTR; exon 1B | -/C | 0.052 | 1 |
rs10482614 | 142782402 | 5' UTR; between exon 1 C and exon 1 H | G/A | 0.134 | 0.012 |
rs10482616 | 142781567 | 5' UTR; between exon 1 H and exon 2 | G/A | 0.113 | 0.342 |
rs4634384 | 142780697 | 5' UTR; between exon 1 H and exon 2 | G/A | 0.490 | 0.687 |
rs6190 | 142780337 | exon 2; non-synonymous (R23K) | G/A | 0.021 | 1 |
rs1800445 | 142779311 | exon; non-synonymous (N363S) | A/G | 0 | - |
rs41423247 | 142778575 | intron; between exon 2 and exon 3, 645 bases downstream of exon 2 (Bcl1) | C/G | 0.345 | 0.825 |
rs6196 | 142661490 | exon 9α; synonymous (N766N) | T/C | 0.139 | 0.017 |
rs6198 | 142657621 | 3' UTR; inside exon 9β (A369G) | A/G | 0.170 | 0.065 |